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Retrogressive thaw slumps (RTS)—thermal erosion of soil and vegetation after ground ice thaw—are increasing. Recovery of plant biomass after RTS is important for maintaining Arctic carbon (C) stocks and is regulated by nutrient availability for new plant growth. Many RTS are characterized by verdant shrub growth mid-succession, atypical of the surrounding nutrient-limited tundra. Here, we investigated the potential for internal and external sources of nitrogen (N) and phosphorus (P) to support mid-successional shrub growth at three Alaskan RTS chronosequences. We assessed patterns of soil and microbial CNP, soil NP cycling rates and stocks, N inputs via biological N₂-fixation, and thaw leachate over time after disturbance. We found a clear transfer of P stocks from mineral to organic soils with increasing site age, yet insufficient N from any one source to support observed shrub growth. Instead, multiple mechanisms may have contributed to mid-successional shrub growth, including sustained N-cycling with reduced plant biomass, N leaching from undisturbed tundra, uninvestigated sources of N₂-fixation, and most promising given the large resource, deep mineral soil N stocks. These potential mechanisms of N supply are critical for the regulation of the Arctic C cycle in response to an increasingly common climate-driven disturbance.

The quantity and preservation of carbon‐rich organic matter (OM) underlying permafrost uplands, and the evolution of carbon accumulation with millennial climate change, are large sources of uncertainty in carbon cycle feedbacks on climate change. We investigated permafrost OM accumulation and degradation over the Holocene using a transect of sediment cores dating back to at least c. 6 ka, from a hillslope in the Eight Mile Lake watershed, central Alaska. We find decimeter‐scale organic‐rich (111 ± 45 kg C m⁻³) and organic‐poor (49 ± 30 kg C m⁻³) layers below an upper peat, which store 35% ± 11% and 41% ± 20% of the carbon in the upper 1 m, respectively. In organic‐poor layers, scattered¹⁴C ages of plant macrofossils and higher percentages of degradedAlnusandBetulapollen indicate reworking by cryoturbation and hillslope processes. Whereas organic carbon to nitrogen ratios generally indicate OM freshening up‐core, amino acid bacterial biomarkers, includingd‐enantiomers and gamma‐aminobutyric acid, suggest enhanced degradation prior to 5 ka. Carbon accumulation rates increased from ∼4 to 14 g C m⁻² year⁻¹from c. 8 to 0.2 ka, coinciding with decreasing temperatures and increasing moisture regionally, which may have promoted OM accumulation. Carbon stocks within the upper 1 m average 66 ± 13 kg C m⁻², varying from 77 kg C m⁻²in a buried depression on the upper slope to 48 kg C m⁻²downslope. We conclude that heterogeneity in preserved OM reflects a combination of hillslope geomorphic processes, cryoturbation, and climatic variations over the Holocene.

The northern permafrost region has been projected to shift from a net sink to a net source of carbon under global warming. However, estimates of the contemporary net greenhouse gas (GHG) balance and budgets of the permafrost region remain highly uncertain. Here, we construct the first comprehensive bottom‐up budgets of CO₂, CH₄, and N₂O across the terrestrial permafrost region using databases of more than 1000 in situ flux measurements and a land cover‐based ecosystem flux upscaling approach for the period 2000–2020. Estimates indicate that the permafrost region emitted a mean annual flux of 12 (−606, 661) Tg CO₂–C yr⁻¹, 38 (22, 53) Tg CH₄–C yr⁻¹, and 0.67 (0.07, 1.3) Tg N₂O–N yr⁻¹to the atmosphere throughout the period. Thus, the region was a net source of CH₄and N₂O, while the CO₂balance was near neutral within its large uncertainties. Undisturbed terrestrial ecosystems had a CO₂sink of −340 (−836, 156) Tg CO₂–C yr⁻¹. Vertical emissions from fire disturbances and inland waters largely offset the sink in vegetated ecosystems. When including lateral fluxes for a complete GHG budget, the permafrost region was a net source of C and N, releasing 144 (−506, 826) Tg C yr⁻¹and 3 (2, 5) Tg N yr⁻¹. Large uncertainty ranges in these estimates point to a need for further expansion of monitoring networks, continued data synthesis efforts, and better integration of field observations, remote sensing data, and ecosystem models to constrain the contemporary net GHG budgets of the permafrost region and track their future trajectory.

Boreal forests harbor as much carbon (C) as the atmosphere and significant amounts of organic nitrogen (N), the nutrient most likely to limit plant productivity in high‐latitude ecosystems. In the boreal biome, the primary disturbance is wildfire, which consumes plant biomass and soil material, emits greenhouse gasses, and influences long‐term C and N cycling. Climate warming and drying is increasing wildfire severity and frequency and is combusting more soil organic matter (SOM). Combustion of surface SOM exposes deeper older layers of accumulated soil material that previously escaped combustion during past fires, here termed legacy SOM. Postfire SOM decomposition and nutrient availability are determined by these layers, but the drivers of legacy SOM decomposition are unknown. We collected soils from plots after the largest fire year on record in the Northwest Territories, Canada, in 2014. We used radiocarbon dating to measure Δ¹⁴C (soil age index), soil extractions to quantify N pools and microbial biomass, and a 90‐day laboratory incubation to measure the potential rate of element mineralization and understand patterns and drivers of legacy SOM C decomposition and N availability. We discovered that bulk soil C age predicted C decomposition, where cumulatively, older soil (approximately −450.0‰) produced 230% less C during the incubation than younger soil (~0.0‰). Soil age also predicted C turnover times, with old soil turnover 10 times slower than young soil. We found respired C was younger than bulk soil C, indicating most C enters and leaves relatively quickly, while the older portion remains a stable C sink. Soil age and other indices were unrelated to N availability, but microbial biomass influenced N availability, with more microbial biomass immobilizing soil N pools. Our results stress the importance of legacy SOM as a stable C sink and highlight that soil age drives the pace and magnitude of soil C contributions to the atmosphere between wildfires.

Permafrost thaw causes the seasonally thawed active layer to deepen, causing the Arctic to shift toward carbon release as soil organic matter becomes susceptible to decomposition. Ground subsidence initiated by ice loss can cause these soils to collapse abruptly, rapidly shifting soil moisture as microtopography changes and also accelerating carbon and nutrient mobilization. The uncertainty of soil moisture trajectories during thaw makes it difficult to predict the role of abrupt thaw in suppressing or exacerbating carbon losses. In this study, we investigated the role of shifting soil moisture conditions on carbon dioxide fluxes during a 13‐year permafrost warming experiment that exhibited abrupt thaw. Warming deepened the active layer differentially across treatments, leading to variable rates of subsidence and formation of thermokarst depressions. In turn, differential subsidence caused a gradient of moisture conditions, with some plots becoming consistently inundated with water within thermokarst depressions and others exhibiting generally dry, but more variable soil moisture conditions outside of thermokarst depressions. Experimentally induced permafrost thaw initially drove increasing rates of growing season gross primary productivity (GPP), ecosystem respiration (R_eco), and net ecosystem exchange (NEE) (higher carbon uptake), but the formation of thermokarst depressions began to reverse this trend with a high level of spatial heterogeneity. Plots that subsided at the slowest rate stayed relatively dry and supported higher CO₂fluxes throughout the 13‐year experiment, while plots that subsided very rapidly into the center of a thermokarst feature became consistently wet and experienced a rapid decline in growing season GPP,R_eco, and NEE (lower carbon uptake or carbon release). These findings indicate that Earth system models, which do not simulate subsidence and often predict drier active layer conditions, likely overestimate net growing season carbon uptake in abruptly thawing landscapes.

Significant progress in permafrost carbon science made over the past decades include the identification of vast permafrost carbon stocks, the development of new pan‐Arctic permafrost maps, an increase in terrestrial measurement sites for CO₂and methane fluxes, and important factors affecting carbon cycling, including vegetation changes, periods of soil freezing and thawing, wildfire, and other disturbance events. Process‐based modeling studies now include key elements of permafrost carbon cycling and advances in statistical modeling and inverse modeling enhance understanding of permafrost region C budgets. By combining existing data syntheses and model outputs, the permafrost region is likely a wetland methane source and small terrestrial ecosystem CO₂sink with lower net CO₂uptake toward higher latitudes, excluding wildfire emissions. For 2002–2014, the strongest CO₂sink was located in western Canada (median: −52 g C m⁻² y⁻¹) and smallest sinks in Alaska, Canadian tundra, and Siberian tundra (medians: −5 to −9 g C m⁻² y⁻¹). Eurasian regions had the largest median wetland methane fluxes (16–18 g CH₄m⁻² y⁻¹). Quantifying the regional scale carbon balance remains challenging because of high spatial and temporal variability and relatively low density of observations. More accurate permafrost region carbon fluxes require: (a) the development of better maps characterizing wetlands and dynamics of vegetation and disturbances, including abrupt permafrost thaw; (b) the establishment of new year‐round CO₂and methane flux sites in underrepresented areas; and (c) improved models that better represent important permafrost carbon cycle dynamics, including non‐growing season emissions and disturbance effects.

Modeling has become an indispensable tool for scientific research. However, models generate great uncertainty when they are used to predict or forecast ecosystem responses to global change. This uncertainty is partly due to parameterization, which is an essential procedure for model specification via defining parameter values for a model. The classic doctrine of parameterization is that a parameter is constant. However, it is commonly known from modeling practice that a model that is well calibrated for its parameters at one site may not simulate well at another site unless its parameters are tuned again. This common practice implies that parameter values have to vary with sites. Indeed, parameter values that are estimated using a statistically rigorous approach, that is, data assimilation, vary with time, space, and treatments in global change experiments. This paper illustrates that varying parameters is to account for both processes at unresolved scales and changing properties of evolving systems. A model, no matter how complex it is, could not represent all the processes of one system at resolved scales. Interactions of processes at unresolved scales with those at resolved scales should be reflected in model parameters. Meanwhile, it is pervasively observed that properties of ecosystems change over time, space, and environmental conditions. Parameters, which represent properties of a system under study, should change as well. Tuning has been practiced for many decades to change parameter values. Yet this activity, unfortunately, did not contribute to our knowledge on model parameterization at all. Data assimilation makes it possible to rigorously estimate parameter values and, consequently, offers an approach to understand which, how, how much, and why parameters vary. To fully understand those issues, extensive research is required. Nonetheless, it is clear that changes in parameter values lead to different model predictions even if the model structure is the same.

Isotopic radiocarbon (Δ¹⁴C) signatures of ecosystem respiration (Reco) can identify old soil carbon (C) loss and serve as an early indicator of permafrost destabilization in a warming climate. Warming also stimulates plant productivity causing plant respiration to dominate Reco Δ¹⁴C signatures and potentially obscuring old soil C loss. Here, we investigate how a wide spatio‐temporal gradient of permafrost thaw and plant productivity affects Reco Δ¹⁴C patterns and isotopic partitioning. Spatial gradients came from a warming experiment with doubling thaw depth and variable biomass, and a vegetation removal manipulation to eliminate plant contributions. We sampled in August and September to capture transitions from high to low plant productivity, decreased surface soil temperature, and relatively small seasonal thaw extensions. We found that surface processes dominate spatial variation in old soil C loss and a process‐based partitioning approach was crucial for constraining old soil C loss. Resampling the same plots in different times of the year revealed that old soil C losses tripled with cooling surface temperature, and the largest old soil C losses were detected when the organic‐to‐mineral soil horizons thawed (∼50–60 cm). We suggest that the measured increase in old soil respiration over the season and when the organic‐to‐mineral horizon thawed, may be explained by mobilization of nitrogen that stimulates microbial decomposition at depth. Our results suggest that soil C in the organic to mineral horizon may be an important source of soil C loss as the entire Arctic region warms and could lead to nonlinearities in projected permafrost climate feedbacks.

Soil respiration (i.e. from soils and roots) provides one of the largest global fluxes of carbon dioxide (CO₂) to the atmosphere and is likely to increase with warming, yet the magnitude of soil respiration from rapidly thawing Arctic-boreal regions is not well understood. To address this knowledge gap, we first compiled a new CO₂flux database for permafrost-affected tundra and boreal ecosystems in Alaska and Northwest Canada. We then used the CO₂database, multi-sensor satellite imagery, and random forest models to assess the regional magnitude of soil respiration. The flux database includes a new Soil Respiration Station network of chamber-based fluxes, and fluxes from eddy covariance towers. Our site-level data, spanning September 2016 to August 2017, revealed that the largest soil respiration emissions occurred during the summer (June–August) and that summer fluxes were higher in boreal sites (1.87 ± 0.67 g CO₂–C m⁻²d⁻¹) relative to tundra (0.94 ± 0.4 g CO₂–C m⁻²d⁻¹). We also observed considerable emissions (boreal: 0.24 ± 0.2 g CO₂–C m⁻²d⁻¹; tundra: 0.18 ± 0.16 g CO₂–C m⁻²d⁻¹) from soils during the winter (November–March) despite frozen surface conditions. Our model estimates indicated an annual region-wide loss from soil respiration of 591 ± 120 Tg CO₂–C during the 2016–2017 period. Summer months contributed to 58% of the regional soil respiration, winter months contributed to 15%, and the shoulder months contributed to 27%. In total, soil respiration offset 54% of annual gross primary productivity (GPP) across the study domain. We also found that in tundra environments, transitional tundra/boreal ecotones, and in landscapes recently affected by fire, soil respiration often exceeded GPP, resulting in a net annual source of CO₂to the atmosphere. As this region continues to warm, soil respiration may increasingly offset GPP, further amplifying global climate change.

Almost half of the global terrestrial soil carbon (C) is stored in the northern circumpolar permafrost region, where air temperatures are increasing two times faster than the global average. As climate warms, permafrost thaws and soil organic matter becomes vulnerable to greater microbial decomposition. Long‐term soil warming of ice‐rich permafrost can result in thermokarst formation that creates variability in environmental conditions. Consequently, plant and microbial proportional contributions to ecosystem respiration may change in response to long‐term soil warming. Natural abundance δ¹³C and Δ¹⁴C of aboveground and belowground plant material, and of young and old soil respiration were used to inform a mixing model to partition the contribution of each source to ecosystem respiration fluxes. We employed a hierarchical Bayesian approach that incorporated gross primary productivity and environmental drivers to constrain source contributions. We found that long‐term experimental permafrost warming introduced a soil hydrology component that interacted with temperature to affect old soil C respiration. Old soil C loss was suppressed in plots with warmer deep soil temperatures because they tended to be wetter. When soil volumetric water content significantly decreased in 2018 relative to 2016 and 2017, the dominant respiration sources shifted from plant aboveground and young soil respiration to old soil respiration. The proportion of ecosystem respiration from old soil C accounted for up to 39% of ecosystem respiration and represented a 30‐fold increase compared to the wet‐year average. Our findings show that thermokarst formation may act to moderate microbial decomposition of old soil C when soil is highly saturated. However, when soil moisture decreases, a higher proportion of old soil C is vulnerable to decomposition and can become a large flux to the atmosphere. As permafrost systems continue to change with climate, we must understand the thresholds that may propel these systems from a C sink to a source.